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Harvard faculty accepted her too, but then school officials stepped in and overruled the decision.

Michelle Jones was released last month after serving more than two decades in an Indiana prison for the murder of her 4-year-old son. The very next day, she arrived at New York University, a promising Ph.D. candidate in American studies.

In a breathtaking feat of rehabilitation, Ms. Jones, now 45, became a published scholar of American history while behind bars, and presented her work by videoconference to historians’ conclaves and the Indiana General Assembly. With no internet access and a prison library that hewed toward romance novels, she led a team of inmates that pored through reams of photocopied documents from the Indiana State Archives to produce the Indiana Historical Society’s best research project last year. As prisoner No. 970554, Ms. Jones also wrote several dance compositions and historical plays, one of which is slated to open at an Indianapolis theater in December.

N.Y.U. was one of several top schools that recruited her for their doctoral programs. She was also among 18 selected from more than 300 applicants to Harvard University’s history program. But in a rare override of a department’s authority to choose its graduate students, Harvard’s top brass overturned Ms. Jones’s admission after some professors raised concerns that she played down her crime in the application process. ...